Genetics - the biological science of heredity and variation
A common delight is to wonder why we humans appear as we do. Why is it that members of a family or community tend to look more alike than outsiders? Why do some individuals express unusual traits such as color blindness or cystic fibrosis? Why do some of these traits skip a generation or tend to be more common in one sex than the other? What types of children can a couple expect? What kinds of traits can be passed on to our offspring - appearance, disease, behaviour, intelligence? Can we, or should we, try and modify the inheritance or expression of human traits?
These are difficult questions that often have only partial answers. When considered in our own species finding answers to these questions pose many practical difficulties. Consider the second most frequent type of cancer in women (breast) and man (prostate).
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Are all cases of breast and prostate cancer known to be heritable ? Which of these two diseases is most clearly understood to be heritable?? Which of the predominant genetic mechanisms are responsible for breast ? and prostate cancers ? What are some of the problems in understanding these cancers and how could information on other species be useful ? |
The failure of contemporary science to completely determine the inheritance of breast or prostate cancer indicates the difficulties associated with genetic analysis. It is hardly surprizing that early fanciful notions about heredity were found wanting. Hippocrates (ca. 400 B.C.) believed that body parts donated reproductive material ("humors") that were passed to the progeny. These reproductive "humors" determined the offspring to be like the body parts from whence they came.
Aristotle (ca. 350 B.C.) found fault with the Hippocratic view since plants or animals with missing parts could still give rise to progeny with these parts! Thus he proposed that "nutritive substances" were not derived from body parts but rather from nutritive elements on their way to body parts but diverted to a reproductive path. He further belived that the male and female contributions were not the same. In the spirit of male chauvinism he suggested that the seminal "vital heat" shaped the menustral "physical substance" much like a sculpturer molding clay.
In 1859 Charles Darwin proposed in The Origin of Species that selection of biological variants could form the basis for the the origin of new species. His theory required a genetic mechanism to explain the origin and inheritance of the biological variation. He resorted to a Hippocrates-like theory called the theory of pangenesis. Thus "humours" and "nutritive substances" became "gemmules." "Gemmules" were thrown off from cells and tissues and passed to reproductive cells. If a variant was superior in some way, superior "gemmules" were thus passed to offspring to be favoured by selection in the process of speciation.
Although pangenesis and other theories such as preformation provided explanations for some features of inheritance, they were not based on rigorous scientific experimentation. The definitive treatise on genetics was produced by an Augustinian monk in 1865 entitled Experiments in Plant Hybridization,.
Johann Gregor Mendel
One of the strangest facts of scientific history is that the father of genetics was a monk trained in theology. A group photo shows that the 'flower monk' was amongst colleagues who were supportive of his work even though they, and the rest of humanity, did not grasp its significance.

The Flower Monk
Johann Mendel, the son of a poor peasant family, entered the Augustinian monastry in Brno in 1843 where he took the name of Gregor. This provided the only opportunity for a gifted mind to pursue his education in a centre of learning and scientific activity. He studied phyics, mathematics and biology at the University of Vienna. Although he failed his exams he returned to Brno and began a series of experiments in a small garden that laid the foundation for modern genetics.

The
Most Famous Garden in the World - Ever
The Mendel Web
Students of genetics and the history of science are indebted to Roger Blumberg for his construction of The Mendel Web.
In addition to translation and annotation of Mendel's classic paper , The Mendel Web has Essays and Commentary on the many interpretations and evaluations of Experiments in Plant Hybridization,
Gregor Mendel has the unusual distinction of being responsible for the foundation of a new branch of science.
"The British evolutionist, Sir Gavin de Beer, had no doubt on the matter. In 1965, the centenary of Mendel's famous paper, he declared on the radio: 'There is not known another example of a science which sprang fully formed from the brain of one man.' To an audience at the Royal Society that year he delivered an address with the title, 'Genetics: The Centre of Science', in which he explained himself more fully: It is not often possible to pinpoint the origin of a whole new branch of science accurately in time and place . . . But genetics is an exception, for it owes its origin to one man, Gregor Mendel, who expounded its basic principles at Brno on 8 February and 8 March 1865" - (De Beer cited Robert C. Olby in The Mendel Web).
Unlike most scientific documents, this powerful and elegant paper can ellict an emotional response;
"Gregor Mendel's short treatise "Experiments on Plant Hybrids" is one of the triumphs of the human mind. It does not simply announce the discovery of important facts by new methods of observation and experiment. Rather, in an act of highest creativity, it presents these facts in a conceptual scheme which gives them general meaning. Mendel's paper is not solely a historical document. It remains alive as a supreme example of scientific experimentation and profound penetration of data. It can give pleasure and provide insight to each new reader-and strengthen the exhilaration of being in the company of a great mind at every subsequent study. "(Curt Stern and Eva Sherwood cited by Jan Sapp in The Mendel Web)
and move others to philosophical prose.
"Mendel is a curious wraith in history. His associates, his followers, are all in the next century. That is when his influence began. Yet if we are to understand him and the way he rescued Darwinism itself from oblivion we must go the long way back to Brunn in Moravia and stand among the green peas in a quiet garden. Gregor Mendel had a strange fate: he was destined to live one life painfully in the flesh at Brunn and another, the intellectual life of which he dreamed, in the following century. His words, his calculations were to take a sudden belated flight out of the dark tomblike volumes and be written on hundreds of university blackboards, and go spinning through innumerable heads." (Loren Eisely cited by Jan Sapp in The Mendel Web)
Our blackboard may be an e-page but our heads welcome
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the pleasure and insight of being in the company of a great mind |
Mendelian controversy
As Loren Eisley noted it was some 35 years after Mendel's presentation of Experiments in Plant Hybridization before the significance of his work finally permeated the scientific community. Athough Mendel's paper is clearly regarded as giving birth to genetics it has been the source of much controversy. Foremost among these issues is the intent of Mendel's research. What did Mendel think he discovered? Was he trying to find a mechanism for Darwinian evolution, was he a non-Darwinian or was he not at all interested in evolution? Why was his paper neglected for such a long time? Did he falsify his data, or even more extreme, were his experiments completely fictious!
To gain some appreciation of the import of a revered century-old document on contemporary science identify the paragraph in Introductory Comments of Experiments in Plant Hybridization that:
(i) describes his experimental approach and
(ii) indicates his intent
Three scientists, de Vries, Correns and Tschermak, independently rediscovered Mendelian genetics in 1900. There is evidence that the 'rediscovery' included a reluctant admission of the earlier work of Mendel. The rapid widespread application of genetics to basic and applied research resulted in the development of contemporary terminology and a focus on his so-called Laws of Segregation and Independent Assortment. Following is a development of the modern application with extensive reference to his original work.
Selection of experimental system
F1 Monohybrids From Reciprocal Crosses
At this stage Mendel didn't know if the dominant round or yellow F1 was identical to the true breeding round or yellow parents - or differed in some aspects. He determined the nature of the F1 by self pollination of the F1 to produce the F2. That is, the F1 was known by the F2!
F1 hybrids were allowed to naturally self pollinate and produce F2 progeny. The F1 produced 6022 yellow and 2001 green F2 seeds. Mendel noted that this represented the dominant : recessive trait in a 3:1 ratio.
The 3:1 F2 ratio was observed for all seven traits including length of stem.
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Mendel's summary comment was "In this generation there reappear, together with the dominant characters, also the recessive ones with their peculiarities fully developed, and this occurs in the definitely expressed average proportion of 3:1, so that among each 4 plants of this generation three display the dominant character and one the recessive. "
Rock of Gibraltor He also stated, "Transitional forms were not observed in any experiment " - Mendel's emphasis. For example, he observed only yellow and green seeds in the F2 . No new forms, such as orange, red, purple etc. were observed. This indicates that dominant and recessive phenotypes are stable and are passed from parents to offspring in an unaltered form. The notion that heredity elements are passed through the generations unchanged is one of the most fundamental of Mendels discoveries. Oddly enough, he states, what to him was the obvious, but does not dwell on this seminal discovery. Constancy of heredity elements over the generations underlies the modern application of Mendelism.
As the F1 as known by the F2, the F2 would be known by the F3. One can do no better than Mendel's own clear and vivid text.
"Those forms which in the first generation exhibit the recessive character do not further vary in the second generation as regards this character; they remain constant in their offspring. "
"It is otherwise with those which possess the dominant character in the first generation. Of these two-thirds yield offspring which display the dominant and recessive characters in the proportion of 3:1, and thereby show exactly the same ratio as the hybrid forms, while only one-third remains with the dominant character constant. "
"Expt. 1: Among 565 plants which were raised from round seeds of the first generation, 193 yielded round seeds only, and remained therefore constant in this character; 372, however, gave both round and wrinkled seeds, in the proportion of 3:1. The number of the hybrids, therefore, as compared with the constants is 1.93:1." ?
"Expt. 2: Of 519 plants which were raised from seeds whose albumen was of yellow color in the first generation, 166 yielded exclusively yellow, while 353 yielded yellow and green seeds in the proportion of 3:1. There resulted, therefore, a division into hybrid and constant forms in the proportion of 2.13:1." ?
Notation: We assume that a Mendelian gene is responsible for a trait and refer to that trait by a genetic symbol. For the seed shape trait we could arbitrarily choose lower case w to stand for the recessive wrinkled gene determinant. It would be equally valid to select upper case R to stand for the alternate dominant round gene determinant. Any other designation would be valid as long as it was clearly defined; e.g., wri or wri for wrinkled and Rnd or Rnd for round. Genotypes are usually, but not always, italicized. Net browsers don't support italics or superscripts, so you can't interact with the courseware in these modes. It's not a big loss. Mendel avoided confusion by using only A and a to refer to dominant or recessive determinants and then used them within the context of different traits. We'll follow Mendel's lead and carefully define and use notation within specific contexts.
Wild-type: The concept of wild-type is that of a species as it would exist in nature. Designation of wild-type is obviously arbitrary since the appearance of individuals in nature is variable. Another way of thinking about wild-type is that it is that form the geneticist calls wild-type for reasons of convenience or convention. It is common to use + to indicate the wild-type determinant. For example, if wild type is deemed to be round, rather than using R, the wild-type gene may be indicated by +, R+, or R+. However, as noted above, we'll define wild-type as appropriate - with or without + notation.
If we used w to designate the recessive wrinkled gene then a common sense designation for the dominant round determining gene would be W. Since w and W result in different phenotypes we refer to them as alternative forms or alleles of the same gene.
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P1
and P2 gametes form the F1
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| P1/P2 |
G
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g
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Gg
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| F1 gametes combine at random to form the F2 |
| F1 gametes | 1/2 G | 1/2 g |
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1/2 G
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1/4 GG
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1/4 Gg
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| 1/2 g | 1/4 Gg | 1/4 gg |
Fill in for the seed shape trait.
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P1
and P2 gametes form the F1
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Mendel did not summarize these observations by stating a specific law or theorem. However, with the 20th century rediscovery of Experiments in Plant Hybridization, and the widespread application of Mendelian genetics, the Law of Segregation was formulated and became widely used. Practice application of the stated Law of Segregation below to the two above ^ tables^.
The Law of Segregation states that a monohybrid "Aa" produces haploid "A" and "a " gametes with equal frequency which then combine at random to form diploid progeny.
Problem Sets
e-pter 1
A Mendrill to get you started Genetics makes extensive use of abbreviated notation to indicate genotypes. The implied relationship between genotype and phenotype - that the phenotype results from the genotype, requires the agile flipping back and forth between the two terms. Furthermore the geneticist must assign genotypes that sensibly recall the phenotype and be consistent in the use of the designated terminology. The first question is a small drill on genotype assignment / utilization and the Law of Segregation.
1.
A red flowered pea plant was crossed to a white flowered pea plant and the F1 progeny observed was 1/2 red and 1/2 white.
(i). the dominant phenotype is red ? ; white ? ; [ red or white] ?
(ii).Fill in the four suggested notations for this cross
1. white is dominant, use lower case first letter for the recessive trait red.
2. white is dominant, use upper case first letter for the dominant trait
3. red is dominant, use upper case first letter for the dominant trait
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4. red is dominant, use lower case first letter for the recessive trait
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2.
Hornless (polled) cattle are H_ ,which is dominant to horned hh. Farmer Brown wants to establish a pure-breeding herd of hornless Texas longhorns and at great cost purchased a rare polled Texas longhorn bull. Tex, the Texan who sold him the bull, said at least half the progeny from breeding horned cows would be polled. In the first year farmer Brown's polled bull breed four cows ( <-- you judge the best cow); three horned and one polled calves were born. Farmer Brown loaded the bull in the truck, drove to Texas, and demanded his money back. Did Tex cheat farmer Brown?
3 .
pigeons fly when reloaded
Pigeons may have a checkered or plain feather pattern. The following results were obtained.
Cross F1 Progeny checkered plain (i) checkered X checkered 37 0 (ii) checkered X plain 43 0 (iii) plain X plain 0 38
| Net resources on human genetic diseases
An attractive net interface for some human genetic diseases is:
Diseases are placed into seven major categories which are further divided into specific diseases and their associated genetic factors. Links to Online Mendelian Inheritance in Man (OMIM) provide very detailed genetic data, including molecular details of disease alleles. You will find it interesting to surf Genes and Disease Map to get a feel for the involvement of dominant and recessive alleles in the etiology of disease. For access to any human genetic disorder go directly to OMIM and use the the search protocol. |
4. Consider the following four generation pedigree.
additional problems -do problems 1 - 8
5. Apparently normal 5-6 month old infants with Tay Sachs disease develop paralysis, mental retardation and usually die by age 6. TSDTSD recessive homozygotes have a deficiency in the enzyme hexosaminidase A which leads to a deteriorated nervous system. Jews of Eastern European descent had TSD at a frequency of ca 1/3500 - ca 10 times higher than the general population. However, this disease has been virtually eliminated in those populations that used genetic technology , in combination with genetic counseling, to detect TSDTSD+ carriers. For example, in some segments of the Jewish population the Rabbi "matchmaker" was informed of carrier status and counseled against marriages between two TSDTSD+ carriers.
You have just put up your shingle as a qualified genetic councellor and a childless, penotypically normal couple has come to your office. The man has a paternal female first cousin who died from TSD and the woman had a maternal uncle who died from TSD.
(i) draw a pedigree showing the relevant individuals and their putative genotypes ?
(ii) calculate the probability that; they are both carriers , that only one of them is a carrier , that neither is a carrier
(iii) what is the probability that they will have a TSDTSD child ?
(iv) what is your best advise to them ?
F1 Hybrids in Which Several Different Traits are AssociatedThe seven monohybrid analyses all followed the inheritance of only one trait at a time. What might we expect if the inheritance of two traits are followed simultaneously? Perhaps the normal dominance relationships would fail, new characteristics may appear amongst the progeny, or simple reproducible ratios may no longer be discernable in different generations. Mendel sought answers to these questions by following the inheritance of two traits at the same time.
The first generation from the F1 dihybrid - the F2 generation ?
Mendel described the results: "The plants raised therefrom yielded seeds of four sorts, which frequently presented themselves in one pod. In all, 556 seeds were yielded by 15 plants, and of these there were: 315 round and yellow, 101 wrinkled and yellow, 108 round and green, 32 wrinkled and green."
The dihybrid F2 phenotypic ratio is 9/16 yellow round
: 3/16 yellow wrinkled
: 3/16 green round
: 1/16 green wrinkled
. The following table summarizes the observations in this generation.
Recall that the dominant phenotype of the monohybrid F2 was found to be 1/3 homozygous and 2/3 heterozygous. In the monohybrid, the recognition of 1 /3 true-breeding and 2/3 hybrid F2 genotypes was only known by the absence or presence of segregation in the F3 generation.
96 of the 101 yellow wrinkled F2 seeds planted bore F3 seed.
102 of the 108 green round F2 seeds planted bore F3 progeny.
30 of the 32 green wrinkled F2 seed planted bore F3 progeny.